Package: gbs2ploidy 1.0
gbs2ploidy: Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
Functions for inference of ploidy from (Genotyping-by-sequencing) GBS data, including a function to infer allelic ratios and allelic proportions in a Bayesian framework.
Authors:
gbs2ploidy_1.0.tar.gz
gbs2ploidy_1.0.zip(r-4.5)gbs2ploidy_1.0.zip(r-4.4)gbs2ploidy_1.0.zip(r-4.3)
gbs2ploidy_1.0.tgz(r-4.4-any)gbs2ploidy_1.0.tgz(r-4.3-any)
gbs2ploidy_1.0.tar.gz(r-4.5-noble)gbs2ploidy_1.0.tar.gz(r-4.4-noble)
gbs2ploidy_1.0.tgz(r-4.4-emscripten)gbs2ploidy_1.0.tgz(r-4.3-emscripten)
gbs2ploidy.pdf |gbs2ploidy.html✨
gbs2ploidy/json (API)
| # Install 'gbs2ploidy' in R: |
| install.packages('gbs2ploidy', repos = c('https://zgompert.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- dat - Simulated allele counts
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 8 years agofrom:08ee18f2eb. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 18 2024 |
| R-4.5-win | NOTE | Sep 18 2024 |
| R-4.5-linux | NOTE | Sep 18 2024 |
| R-4.4-win | NOTE | Sep 18 2024 |
| R-4.4-mac | NOTE | Sep 18 2024 |
| R-4.3-win | NOTE | Sep 18 2024 |
| R-4.3-mac | NOTE | Sep 18 2024 |
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data | gbs2ploidy-package gbs2ploidy |
| Simulated allele counts | dat |
| Discriminate cytotypes using GBS data | estploidy |
| Estimate allelic proportions | estprops |
