Package: gbs2ploidy 1.0

gbs2ploidy: Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data

Functions for inference of ploidy from (Genotyping-by-sequencing) GBS data, including a function to infer allelic ratios and allelic proportions in a Bayesian framework.

Authors:Zachariah Gompert

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gbs2ploidy.pdf |gbs2ploidy.html✨
gbs2ploidy/json (API)

# Install 'gbs2ploidy' in R:
install.packages('gbs2ploidy', repos = c('https://zgompert.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • dat - Simulated allele counts

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

jagscpp

1.00 score 1 stars 7 scripts 208 downloads 1 mentions 2 exports 4 dependencies

Last updated 8 years agofrom:08ee18f2eb. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 17 2025
R-4.5-winNOTEMar 17 2025
R-4.5-macNOTEMar 17 2025
R-4.5-linuxNOTEMar 17 2025
R-4.4-winNOTEMar 17 2025
R-4.4-macNOTEMar 17 2025
R-4.4-linuxNOTEMar 17 2025
R-4.3-winNOTEMar 17 2025
R-4.3-macNOTEMar 17 2025

Exports:estploidyestprops

Dependencies:codalatticeMASSrjags